BaseTools: Add included files to deps_target file.

REF: https://bugzilla.tianocore.org/show_bug.cgi?id=2882



After changing the name of the include source file,
when doing incremental build, the previous source file
is not covered in the. DEPs file, and a build error occurs.

The root cause is that the build tools filter out some dependency
files, which are listed in inf source section, from the deps_target file.
Add those files back to deps_target file to resolve the above problem.

Signed-off-by: Mingyue Liang <mingyuex.liang@intel.com>
Cc: Bob Feng <bob.c.feng@intel.com>
Cc: Liming Gao <gaoliming@byosoft.com.cn>
Cc: Yuwei Chen <yuwei.chen@intel.com>

Reviewed-by: Bob Feng <bob.c.feng@intel.com>
Reviewed-by: Yuwei Chen <yuwei.chen@intel.com>